integrated screen shot tool for clippings

timeline of notes in "tape"

xml templates for Todo lists, contacts, phone messages, source code, etc.

tags and categories in tree-type list with customizable icons

indexed database for quick search of categories/notes, highlighted search keywords

encrypt whole database file or just a portion of notes

dictionary spell checker

run in taskbar when minimized

automatic and manual backups with restore feature

xml import/export

send notes via email

older version completely free, upgrade for added features

mind mapping/outliner tool

"everything map" as an index to other maps for specific projects

map topics/categories, map bookmarks from an html file, map computer file structure

export maps to HTML, JPG, XSLT, and more - import from xml, other maps, etc

encrypt entire map or encrypt specific nodes

links between nodes/maps and to files/web pages

searchable within nodes or search whole map

freely available

Google Notebook

Microsoft OneNote

calendar of project related dates/tasks/docs, etc

docs and files by project, project related pages and/or whiteboard

task tracker for issues related to projects

group access controls, clients can't see each other's projects

FAQ and project knowledgebase

Owned (GPL): joomla.org

Owned (GPL): hydramanager.com (component for joomla)

clear separation from project collab (pushbutton and/or email automation between systems is possible)

repository tracks code changes, advanced web app provides view/search features below

searchable history of checked in changes by feature/bug/milestone

bugs tracked alongside code changes with links to specific files in online source code viewer

realtime (and historical) timeline of change checkins with "diffs"

clear roadmap of future bugs/features by milestone

SaaS: devjavu.com

Owned (Apache/BSD): subversion.tigris.org

Free SVN client (tortoisesvn.tigris.org)

Trac

other favorites

config options designed for programmers

dictionary and spell check with option to ignore code elements

customizable toolbar, programmable cliptext, syntax highlighting for most languages

java, php, xhtml, jsp, xml, txt, etc (plus add your own or download user provided samples)

organize files by projects for easy retrieval

free trial version, upgrade after trial period

automate compile/build of objects

run tests

generate updated API docs (javadocs/phpdocs)

archive backup (export to static xhtml?)

package for deploy, then deploy

XAMPP (free)

Tomcat for XAMPP (if necessary)

enter content here that is expected to go live (keep sensitive data elsewhere)

each content area can be password protected individually

allow visitors to post comments on individual content areas or whole site

content stored by date and sorted by categories

admin module to manage content/comment moderation

import/export via XML, RSS feeds of all content and by topic

SaaS: wordpress.com

Owned (GPL): wordpress.org

Thunderbird email

Lightning calendar plugin for Thunderbird

Microsoft Outlook

gmail, google calendar, google reader

Firefox

SeaMonkey

Flock

WinDiff in context menu (free)

other favorites

configurable ftp and sftp with options to increase upload/download speeds

preset, saved, multiple folder tabs and file container tabs save time finding frequently used files

two window layout for file system increases efficiency

toolbar with quickstart and custom icons

run in taskbar when minimized

file windows have same right-click context available in Windows Explorer

quickview for most filetypes (huge time saver)

integrated archive (zip) utility

free full trial version, upgrade after trial period

utility icons I add to Speed Commander toolbar